BioProject database
E569120
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
All labels observed (4)
| Label | Occurrences |
|---|---|
| BioProject | 3 |
| BioProject database canonical | 3 |
| NCBI BioProject database | 1 |
| PRJDB | 1 |
How this entity was disambiguated
This entity first appeared as the object of triple T6098284 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BioProject database Context triple: [Entrez system, hasPart, BioProject database]
-
A.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
B.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
C.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
D.
Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
-
E.
Protein Data Bank
The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: BioProject database Target entity description: The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
-
A.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
B.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
C.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
D.
Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
-
E.
Protein Data Bank
The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
- F. None of above. chosen
Statements (48)
| Predicate | Object |
|---|---|
| instanceOf |
NCBI resource
ⓘ
biological database ⓘ |
| accessionPrefix |
PRJDA
ⓘ
PRJDB ⓘ
linked to:
BioProject database
PRJEB ⓘ PRJNA ⓘ PRJNP ⓘ |
| accessMethod |
NCBI E-utilities API
ⓘ
web interface ⓘ |
| country |
United States
ⓘ
linked to:
United States of America
|
| dataModel | project-centric ⓘ |
| hasPrimaryKey | BioProject accession ⓘ |
| hasURL | https://www.ncbi.nlm.nih.gov/bioproject ⓘ |
| isRelatedTo |
BioSample database
ⓘ
GenBank ⓘ Gene Expression Omnibus ⓘ Sequence Read Archive ⓘ
linked to:
NCBI SRA
|
| linksTo |
Assembly database
ⓘ
BioSample database ⓘ GEO ⓘ GenBank ⓘ Gene Expression Omnibus ⓘ SRA ⓘ Sequence Read Archive ⓘ
linked to:
NCBI SRA
|
| linksTogether | data from multiple NCBI databases ⓘ |
| locatedIn |
United States
ⓘ
linked to:
United States of America
|
| maintainedBy |
NCBI
ⓘ
National Center for Biotechnology Information ⓘ |
| organizes |
functional genomics studies
ⓘ
genome sequencing projects ⓘ large-scale biological research projects ⓘ |
| organizesBy | research project ⓘ |
| partOf |
NCBI Entrez system
ⓘ
linked to:
Entrez system
|
| provides |
links to underlying sequence data
ⓘ
project-level metadata ⓘ study descriptions ⓘ |
| publisher | National Center for Biotechnology Information ⓘ |
| scope |
epigenomics
ⓘ
functional genomics ⓘ genomics ⓘ metagenomics ⓘ transcriptomics ⓘ |
| supports |
public access to project information
ⓘ
submission of new projects ⓘ |
| usedFor |
data discovery
ⓘ
data integration ⓘ linking related datasets ⓘ project tracking ⓘ |
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: BioProject database Description of subject: The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
Referenced by (8)
Full triples — surface form annotated when it differs from this entity's canonical label.
linked to: BioProject database
linked to: BioProject database
linked to: BioProject database
linked to: BioProject database
linked to: BioProject database