Triple

T36599211

Position	Surface form	Disambiguated ID	Type / Status
Subject	MAPK signaling pathway	`E902874`	entity
Predicate	negativelyRegulatedBy	`P149277`	FINISHED
Object	MAPK phosphatases MAPK phosphatases are enzymes that deactivate mitogen-activated protein kinases by removing phosphate groups, thereby modulating cellular responses such as proliferation, differentiation, and stress signaling.	`E2190171`	NE FINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini

Instruction

Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).

Input

Phrase: MAPK phosphatases | Statement: [MAPK signaling pathway, negativelyRegulatedBy, MAPK phosphatases]

NEDg Description generation gpt-5.1

Instruction

Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"

Input

Entity: MAPK phosphatases
Triple: [MAPK signaling pathway, negativelyRegulatedBy, MAPK phosphatases]

Generated description

MAPK phosphatases are enzymes that deactivate mitogen-activated protein kinases by removing phosphate groups, thereby modulating cellular responses such as proliferation, differentiation, and stress signaling.

PD Predicate disambiguation gpt-5-mini-2025-08-07

Target predicate: negativelyRegulatedBy
Context triple: [MAPK signaling pathway, negativelyRegulatedBy, MAPK phosphatases]

A. downregulatedBy chosen
Indicates that the level, activity, or expression of one entity is decreased as a result of the influence or action of another entity.
B. regulatoryInteraction
Indicates a relationship where one entity modulates, controls, or influences the activity, expression, or function of another entity through regulatory mechanisms.
C. developmentallyRegulatedBy
Indicates that the occurrence, level, or activity of one process or feature is controlled or influenced by developmental stage–specific mechanisms or factors.
D. regulatesOrIsRegulatedBy
Indicates a bidirectional regulatory relationship in which one entity controls, influences, or modulates another, or is itself controlled, influenced, or modulated by that other entity.
E. hasActivityRegulation
Indicates that one entity exerts control over the level, timing, or manner of another entity’s activity.
F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step	Stage	Batch ID	Status	When
creating	Elicitation	`batch_69f76e66b7b88190848f7a3e1188915f`	completed	May 3, 2026, 3:48 p.m.
NER	Named-entity recognition	`batch_69f7c371931c8190afb1d4dd5157f92c`	completed	May 3, 2026, 9:51 p.m.
NED1	Entity disambiguation (via context triple)	`batch_6a39f9249b14819095d190d150395eb3`	completed	June 23, 2026, 3:10 a.m.
NEDg	Description generation	`batch_6a39f9f41ac481908d438b5abb623a43`	completed	June 23, 2026, 3:13 a.m.
NED2	Entity disambiguation (via description)	`batch_6a39faf7f4b08190b433e3a77f32bedd`	completed	June 23, 2026, 3:18 a.m.
PD	Predicate disambiguation	`batch_69f7c1baf25c8190a78dd54a400d2c50`	completed	May 3, 2026, 9:44 p.m.

Created at: May 3, 2026, 4:11 p.m.