Triple

T23448406
Position Surface form Disambiguated ID Type / Status
Subject Penicillium E565604 entity
Predicate notableSpecies P965 FINISHED
Object Penicillium marneffei
Penicillium marneffei is a pathogenic, dimorphic fungus that causes opportunistic systemic infections, particularly in immunocompromised individuals in Southeast Asia.
 E1586654 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Penicillium marneffei | Statement: [Penicillium, notableSpecies, Penicillium marneffei]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Penicillium marneffei
Context triple: [Penicillium, notableSpecies, Penicillium marneffei]
  • A. Blastomyces dermatitidis
    Blastomyces dermatitidis is a dimorphic pathogenic fungus that causes blastomycosis, a systemic fungal infection primarily affecting the lungs and sometimes spreading to other organs in humans and animals.
  • B. Histoplasma capsulatum
    Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
  • C. Cryptococcus neoformans
    Cryptococcus neoformans is an encapsulated yeast-like fungal pathogen that primarily causes life-threatening meningitis and systemic infections, especially in immunocompromised individuals such as those with HIV/AIDS.
  • D. Pseudallescheria
    Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
  • E. Aspergillus fumigatus
    Aspergillus fumigatus is a common airborne filamentous fungus and opportunistic human pathogen, particularly causing severe infections in immunocompromised individuals.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Penicillium marneffei
Triple: [Penicillium, notableSpecies, Penicillium marneffei]
Generated description
Penicillium marneffei is a pathogenic, dimorphic fungus that causes opportunistic systemic infections, particularly in immunocompromised individuals in Southeast Asia.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: Penicillium marneffei
Target entity description: Penicillium marneffei is a pathogenic, dimorphic fungus that causes opportunistic systemic infections, particularly in immunocompromised individuals in Southeast Asia.
  • A. Blastomyces dermatitidis
    Blastomyces dermatitidis is a dimorphic pathogenic fungus that causes blastomycosis, a systemic fungal infection primarily affecting the lungs and sometimes spreading to other organs in humans and animals.
  • B. Histoplasma capsulatum
    Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
  • C. Cryptococcus neoformans
    Cryptococcus neoformans is an encapsulated yeast-like fungal pathogen that primarily causes life-threatening meningitis and systemic infections, especially in immunocompromised individuals such as those with HIV/AIDS.
  • D. Pseudallescheria
    Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
  • E. Aspergillus fumigatus
    Aspergillus fumigatus is a common airborne filamentous fungus and opportunistic human pathogen, particularly causing severe infections in immunocompromised individuals.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e24584f9488190bb32730bd2ce023e completed April 17, 2026, 2:36 p.m.
NER Named-entity recognition batch_69f1a64b27988190b4722425da964407 completed April 29, 2026, 6:33 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0c67bb72588190b6ba67c57b912f30 completed May 19, 2026, 1:38 p.m.
NEDg Description generation batch_6a0c7218a358819082d8b19b57b61013 completed May 19, 2026, 2:22 p.m.
NED2 Entity disambiguation (via description) batch_6a0c76ed37b08190af81b4ae2dc7c028 completed May 19, 2026, 2:42 p.m.
Created at: April 17, 2026, 5:52 p.m.