Triple

T19992636
Position Surface form Disambiguated ID Type / Status
Subject APOE gene E494100 entity
Predicate proteinProductInteractsWith P37224 FINISHED
Object LDL receptor
The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
E1405305 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: LDL receptor | Statement: [APOE gene, proteinProductInteractsWith, LDL receptor]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: LDL receptor
Context triple: [APOE gene, proteinProductInteractsWith, LDL receptor]
  • A. NPC1L1 transporter
    The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
  • B. Frizzled receptor
    Frizzled receptors are a family of G protein–coupled receptor-like proteins that serve as primary cell-surface receptors for Wnt signaling, regulating key processes in development and cell fate determination.
  • C. Ldl
    Ldl is the official station code for Leiden Lammenschans railway station in the Netherlands.
  • D. Friedewald
    Friedewald is a small German locality historically associated with the nobility of Thuringia and Hesse.
  • E. PLCγ2
    PLCγ2 is a phospholipase C isoform that functions as a key signaling enzyme in immune cells, mediating receptor-induced calcium mobilization and downstream activation pathways.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: LDL receptor
Triple: [APOE gene, proteinProductInteractsWith, LDL receptor]
Generated description
The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: LDL receptor
Target entity description: The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
  • A. NPC1L1 transporter
    The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
  • B. Frizzled receptor
    Frizzled receptors are a family of G protein–coupled receptor-like proteins that serve as primary cell-surface receptors for Wnt signaling, regulating key processes in development and cell fate determination.
  • C. Ldl
    Ldl is the official station code for Leiden Lammenschans railway station in the Netherlands.
  • D. Friedewald
    Friedewald is a small German locality historically associated with the nobility of Thuringia and Hesse.
  • E. PLCγ2
    PLCγ2 is a phospholipase C isoform that functions as a key signaling enzyme in immune cells, mediating receptor-induced calcium mobilization and downstream activation pathways.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: proteinProductInteractsWith
Context triple: [APOE gene, proteinProductInteractsWith, LDL receptor]
  • A. proteinProduct
    Indicates that one entity is the protein that is produced or encoded by another entity (such as a gene or transcript).
  • B. regulatoryInteraction
    Indicates a relationship where one entity modulates, controls, or influences the activity, expression, or function of another entity through regulatory mechanisms.
  • C. actsSynergisticallyWith
    Indicates that two entities interact in a way that enhances or amplifies each other's effects or outcomes beyond what they would achieve independently.
  • D. notablePropInteraction
    Indicates a significant or noteworthy interaction or relationship occurring between the specified entities.
  • E. hasProteinBinding chosen
    Indicates that one entity is capable of physically binding to or interacting specifically with a protein.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69da626a67648190af9653832a3aeced completed April 11, 2026, 3:02 p.m.
NER Named-entity recognition batch_69e65fe10ffc81908c94168b0a8ea9c9 completed April 20, 2026, 5:18 p.m.
NED1 Entity disambiguation (via context triple) batch_6a080503f1bc8190b71f6d7043ac6593 completed May 16, 2026, 5:47 a.m.
NEDg Description generation batch_6a0806563e1c8190b702fcfc009c84d5 completed May 16, 2026, 5:53 a.m.
NED2 Entity disambiguation (via description) batch_6a0806e876c881909f0c30e5dd16ce20 completed May 16, 2026, 5:55 a.m.
PD Predicate disambiguation batch_69e537fd311881908448f2aea8b4812e completed April 19, 2026, 8:15 p.m.
Created at: April 11, 2026, 3:31 p.m.