Triple

T38699976
Position Surface form Disambiguated ID Type / Status
Subject MPS II E950113 entity
Predicate isEncodedByGene P90097 FINISHED
Object IDS gene
The IDS gene encodes the iduronate 2-sulfatase enzyme, whose deficiency causes the lysosomal storage disorder mucopolysaccharidosis type II (Hunter syndrome).
 E2280989 NE FINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: IDS gene | Statement: [MPS II, isEncodedByGene, IDS gene]
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: IDS gene
Triple: [MPS II, isEncodedByGene, IDS gene]
Generated description
The IDS gene encodes the iduronate 2-sulfatase enzyme, whose deficiency causes the lysosomal storage disorder mucopolysaccharidosis type II (Hunter syndrome).
PD Predicate disambiguation gpt-5-mini-2025-08-07 
Target predicate: isEncodedByGene
Context triple: [MPS II, isEncodedByGene, IDS gene]
  • A. encodedByGene chosen
    Indicates that a particular gene is responsible for producing or specifying the sequence of a given molecule (such as a protein or RNA).
  • B. hasGene
    Indicates that an entity possesses or contains a specific gene as part of its genetic makeup.
  • C. isGeneticUnitOf
    Indicates that one entity functions as a genetic component, segment, or element that forms part of, or contributes to, the genetic makeup of another entity.
  • D. geneticElement
    Indicates that one entity is a genetic element (such as a gene, sequence, or structural unit of genetic material) associated with or characterized by the other entity.
  • E. isSynthesizedByEnzyme
    Indicates that a substance or molecule is produced or formed through the catalytic action of a specific enzyme.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69f76f0124408190bb39c3040734846b completed May 3, 2026, 3:51 p.m.
NER Named-entity recognition batch_69fcdfbc71c481908ba7f87907b17782 completed May 7, 2026, 6:53 p.m.
NED1 Entity disambiguation (via context triple) batch_6a4205cd37e48190972bcfc2328bec22 completed June 29, 2026, 5:42 a.m.
NEDg Description generation batch_6a420653c04881908ee356576b905174 completed June 29, 2026, 5:44 a.m.
NED2 Entity disambiguation (via description) batch_6a4206b75fb4819094b91f99e9fcd259 completed June 29, 2026, 5:46 a.m.
PD Predicate disambiguation batch_69fcdbe580b8819087f143596b2c79c0 completed May 7, 2026, 6:37 p.m.
Created at: May 3, 2026, 4:33 p.m.