Triple

T37724482
Position Surface form Disambiguated ID Type / Status
Subject tuberous sclerosis complex E939680 entity
Predicate causedByMutationIn P68687 FINISHED
Object TSC1 gene
The TSC1 gene encodes the protein hamartin, a tumor suppressor that regulates cell growth and proliferation and whose disruption is a major cause of tuberous sclerosis complex.
 E2241410 NE FINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TSC1 gene | Statement: [tuberous sclerosis complex, causedByMutationIn, TSC1 gene]
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: TSC1 gene
Triple: [tuberous sclerosis complex, causedByMutationIn, TSC1 gene]
Generated description
The TSC1 gene encodes the protein hamartin, a tumor suppressor that regulates cell growth and proliferation and whose disruption is a major cause of tuberous sclerosis complex.
PD Predicate disambiguation gpt-5-mini-2025-08-07 
Target predicate: causedByMutationIn
Context triple: [tuberous sclerosis complex, causedByMutationIn, TSC1 gene]
  • A. secondaryMutation
    Indicates that an additional, subsequent genetic alteration has occurred following an initial mutation in the same biological context.
  • B. mutationAssociatedWith chosen
    Indicates that a specific genetic mutation is linked or related to another entity, such as a disease, trait, or molecular effect.
  • C. mutationType
    Indicates the specific kind or category of genetic alteration that has occurred in an entity.
  • D. hasMutationSystem
    Indicates that one entity possesses or employs a particular mutation system or mechanism for generating or managing mutations.
  • E. stateMutationMechanism
    Indicates the process or method by which a system’s state is changed from one condition to another.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69f76edc208c8190bc8b9683f75e1024 completed May 3, 2026, 3:50 p.m.
NER Named-entity recognition batch_69fd6a1c1c4881908090053bc359b181 completed May 8, 2026, 4:44 a.m.
NED1 Entity disambiguation (via context triple) batch_6a40d67df1d8819090bf038521de2c5d completed June 28, 2026, 8:08 a.m.
NEDg Description generation batch_6a40da63f78081908dee41d23c8d4026 completed June 28, 2026, 8:25 a.m.
NED2 Entity disambiguation (via description) batch_6a40db0ab1c481909d3db018dd2b8bde completed June 28, 2026, 8:27 a.m.
PD Predicate disambiguation batch_69fd696f24d8819091033afacbdaadc5 completed May 8, 2026, 4:41 a.m.
Created at: May 3, 2026, 4:18 p.m.