Triple

T37535717

Position	Surface form	Disambiguated ID	Type / Status
Subject	Aliivibrio fischeri	`E933189`	entity
Predicate	quorumSensingRegulator	`P188703`	FINISHED
Object	LuxR LuxR is a transcriptional regulator protein in Aliivibrio fischeri that controls bioluminescence and other group behaviors in response to quorum-sensing signals.	`E2230704`	NE FINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini

Instruction

Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).

Input

Phrase: LuxR | Statement: [Aliivibrio fischeri, quorumSensingRegulator, LuxR]

NEDg Description generation gpt-5.1

Instruction

Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"

Input

Entity: LuxR
Triple: [Aliivibrio fischeri, quorumSensingRegulator, LuxR]

Generated description

LuxR is a transcriptional regulator protein in Aliivibrio fischeri that controls bioluminescence and other group behaviors in response to quorum-sensing signals.

PD Predicate disambiguation gpt-5-mini-2025-08-07

Target predicate: quorumSensingRegulator
Context triple: [Aliivibrio fischeri, quorumSensingRegulator, LuxR]

A. usesQuorumSensing
Indicates that an entity communicates or coordinates behavior by detecting and responding to the concentration of signaling molecules produced by its population (quorum sensing).
B. keyRegulator
Indicates that one entity plays a primary controlling or governing role over a process, system, or another entity.
C. regulatoryInteraction
Indicates a relationship where one entity modulates, controls, or influences the activity, expression, or function of another entity through regulatory mechanisms.
D. primaryRegulator
Indicates that one entity serves as the main controlling or governing authority over another entity or process.
E. hasActivityRegulation
Indicates that one entity exerts control over the level, timing, or manner of another entity’s activity.
F. None of above. chosen

Provenance (7 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step	Stage	Batch ID	Status	When
creating	Elicitation	`batch_69f76ec999288190ae26ec7b6aea7046`	completed	May 3, 2026, 3:50 p.m.
NER	Named-entity recognition	`batch_69fbacaf54648190811ea33b34907e8e`	completed	May 6, 2026, 9:03 p.m.
NED1	Entity disambiguation (via context triple)	`batch_6a40954abdbc8190ba1e0c4543b29404`	completed	June 28, 2026, 3:30 a.m.
NEDg	Description generation	`batch_6a4096691bf88190b88d47fe76576953`	completed	June 28, 2026, 3:35 a.m.
NED2	Entity disambiguation (via description)	`batch_6a4096e66a708190ac9cec52f9372283`	completed	June 28, 2026, 3:37 a.m.
PD	Predicate disambiguation	`batch_69fba883f770819091059c6f6c6af9f7`	completed	May 6, 2026, 8:45 p.m.
PDg	Predicate description generation	`batch_69fbacaea12c8190a4c99e64335f0e7e`	completed	May 6, 2026, 9:03 p.m.

Created at: May 3, 2026, 4:17 p.m.