Triple
T32195879
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | chronic lymphocytic leukemia |
E822402
|
entity |
| Predicate | associatedWithGeneMutation |
P68687
|
FINISHED |
| Object | TP53 mutation |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TP53 mutation | Statement: [chronic lymphocytic leukemia, associatedWithGeneMutation, TP53 mutation]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: associatedWithGeneMutation Context triple: [chronic lymphocytic leukemia, associatedWithGeneMutation, TP53 mutation]
-
A.
associatedWithPhenotype
Indicates that an entity has a documented connection or correlation with a particular phenotype or observable trait.
-
B.
mutationAssociatedWith
chosen
Indicates that a specific genetic mutation is linked or related to another entity, such as a disease, trait, or molecular effect.
-
C.
genomicAlteration
Indicates a relationship where an entity has undergone a change or mutation in its genetic material compared to a reference genome.
-
D.
geneticallyLinkedTo
Indicates a relationship where two entities share a genetic connection, such as common ancestry, shared genes, or hereditary association.
-
E.
protectiveAlleleForDisease
Indicates that the presence of a specific allele reduces the risk, severity, or likelihood of developing a particular disease.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69f3490819cc81909bae1f8ce99423c5 |
completed | April 30, 2026, 12:20 p.m. |
| NER | Named-entity recognition | batch_6a037c894b488190bcbec2eccaff4a01 |
completed | May 12, 2026, 7:16 p.m. |
| PD | Predicate disambiguation | batch_6a0379eaa540819095a1c5d9f3513f9b |
completed | May 12, 2026, 7:05 p.m. |
Created at: May 1, 2026, 12:35 a.m.