Triple

T23473119
Position Surface form Disambiguated ID Type / Status
Subject BioSample database E570179 entity
Predicate accessibleVia P1985 FINISHED
Object NCBI web interface
The NCBI web interface is an online portal that allows users to search, browse, and analyze a wide range of biological databases and resources maintained by the National Center for Biotechnology Information.
 E1590927 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI web interface | Statement: [BioSample database, accessibleVia, NCBI web interface]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: NCBI web interface
Context triple: [BioSample database, accessibleVia, NCBI web interface]
  • A. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • B. NCBI databases
    NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
  • C. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. NCBI CD-Search tool
    NCBI CD-Search tool is an online resource that identifies and annotates conserved protein domains in query sequences by comparing them against NCBI’s curated domain databases.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: NCBI web interface
Triple: [BioSample database, accessibleVia, NCBI web interface]
Generated description
The NCBI web interface is an online portal that allows users to search, browse, and analyze a wide range of biological databases and resources maintained by the National Center for Biotechnology Information.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: NCBI web interface
Target entity description: The NCBI web interface is an online portal that allows users to search, browse, and analyze a wide range of biological databases and resources maintained by the National Center for Biotechnology Information.
  • A. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • B. NCBI databases
    NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
  • C. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. NCBI CD-Search tool
    NCBI CD-Search tool is an online resource that identifies and annotates conserved protein domains in query sequences by comparing them against NCBI’s curated domain databases.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e245af8a88819084f2704f6d265a92 completed April 17, 2026, 2:37 p.m.
NER Named-entity recognition batch_69f1a70244208190bbd8f58ac16d4399 completed April 29, 2026, 6:36 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0cdf3d19c08190aa1b8905eb4e13a5 completed May 19, 2026, 10:07 p.m.
NEDg Description generation batch_6a0ce14b83108190a2bf5969f15b0dfe completed May 19, 2026, 10:16 p.m.
NED2 Entity disambiguation (via description) batch_6a0ce203ec688190a7a88c9ddd824bb7 completed May 19, 2026, 10:19 p.m.
Created at: April 17, 2026, 5:58 p.m.