Triple

T23472974
Position Surface form Disambiguated ID Type / Status
Subject GenBank E570176 entity
Predicate collaboratesWith P37 FINISHED
Object DDBJ
DDBJ (DNA Data Bank of Japan) is a major public nucleotide sequence database that forms part of the International Nucleotide Sequence Database Collaboration alongside GenBank and EMBL-EBI.
 E1587954 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: DDBJ | Statement: [GenBank, collaboratesWith, DDBJ]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: DDBJ
Context triple: [GenBank, collaboratesWith, DDBJ]
  • A. NCBI databases
    NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
  • B. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • C. Global Biodiversity Information Facility
    The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
  • D. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • E. Inoki Genome Federation
    Inoki Genome Federation is a Japanese professional wrestling and mixed martial arts promotion founded by Antonio Inoki that has featured high-profile international stars.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: DDBJ
Triple: [GenBank, collaboratesWith, DDBJ]
Generated description
DDBJ (DNA Data Bank of Japan) is a major public nucleotide sequence database that forms part of the International Nucleotide Sequence Database Collaboration alongside GenBank and EMBL-EBI.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: DDBJ
Target entity description: DDBJ (DNA Data Bank of Japan) is a major public nucleotide sequence database that forms part of the International Nucleotide Sequence Database Collaboration alongside GenBank and EMBL-EBI.
  • A. NCBI databases
    NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
  • B. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • C. Global Biodiversity Information Facility
    The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
  • D. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • E. Inoki Genome Federation
    Inoki Genome Federation is a Japanese professional wrestling and mixed martial arts promotion founded by Antonio Inoki that has featured high-profile international stars.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e245af8a88819084f2704f6d265a92 completed April 17, 2026, 2:37 p.m.
NER Named-entity recognition batch_69f1a70244208190bbd8f58ac16d4399 completed April 29, 2026, 6:36 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0c82604cc08190b36c6b9636b6bf42 completed May 19, 2026, 3:31 p.m.
NEDg Description generation batch_6a0ca6f06a348190bfdba0452077f45b completed May 19, 2026, 6:07 p.m.
NED2 Entity disambiguation (via description) batch_6a0ca7bdf7f08190b50191b029480fc5 completed May 19, 2026, 6:11 p.m.
Created at: April 17, 2026, 5:57 p.m.