Triple
T23467057
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | ClinVar |
E569124
|
entity |
| Predicate | usesStandard |
P1587
|
FINISHED |
| Object |
Human Genome Variation Society standards
Human Genome Variation Society standards are internationally recognized guidelines for the consistent nomenclature and reporting of genetic sequence variants in human DNA.
|
E1589493
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Human Genome Variation Society standards | Statement: [ClinVar, usesStandard, Human Genome Variation Society standards]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Human Genome Variation Society standards Context triple: [ClinVar, usesStandard, Human Genome Variation Society standards]
-
A.
Personal Genome Project
The Personal Genome Project is a pioneering open-science initiative that publicly shares the genomic and health data of volunteers to advance research and understanding of human genetics.
-
B.
National Institute of Biomedical Genomics
The National Institute of Biomedical Genomics is an Indian research and training institution dedicated to advancing biomedical genomics, including human disease genomics and public health genomics.
-
C.
Genetic Testing Registry
The Genetic Testing Registry is an NIH-maintained public resource that provides detailed information about genetic tests, their purposes, methodologies, and associated conditions.
-
D.
ClinVar database
The ClinVar database is a public archive that aggregates information about the clinical significance of genetic variants and their relationships to human health.
-
E.
Center of Excellence in Genomic Medicine Research
The Center of Excellence in Genomic Medicine Research is a specialized research institute at King Abdulaziz University focused on advancing genomic science and its applications in medicine and healthcare.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Human Genome Variation Society standards Triple: [ClinVar, usesStandard, Human Genome Variation Society standards]
Generated description
Human Genome Variation Society standards are internationally recognized guidelines for the consistent nomenclature and reporting of genetic sequence variants in human DNA.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Human Genome Variation Society standards Target entity description: Human Genome Variation Society standards are internationally recognized guidelines for the consistent nomenclature and reporting of genetic sequence variants in human DNA.
-
A.
Personal Genome Project
The Personal Genome Project is a pioneering open-science initiative that publicly shares the genomic and health data of volunteers to advance research and understanding of human genetics.
-
B.
National Institute of Biomedical Genomics
The National Institute of Biomedical Genomics is an Indian research and training institution dedicated to advancing biomedical genomics, including human disease genomics and public health genomics.
-
C.
Genetic Testing Registry
The Genetic Testing Registry is an NIH-maintained public resource that provides detailed information about genetic tests, their purposes, methodologies, and associated conditions.
-
D.
ClinVar database
The ClinVar database is a public archive that aggregates information about the clinical significance of genetic variants and their relationships to human health.
-
E.
Center of Excellence in Genomic Medicine Research
The Center of Excellence in Genomic Medicine Research is a specialized research institute at King Abdulaziz University focused on advancing genomic science and its applications in medicine and healthcare.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458ebd808190b3298163132cfb0b |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a6fc35c48190a67614fb4170f15b |
completed | April 29, 2026, 6:36 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a0c8254f3fc819098b6b59eb19e27f0 |
completed | May 19, 2026, 3:31 p.m. |
| NEDg | Description generation | batch_6a0ca6efb0d88190bf15b18cc3f12482 |
completed | May 19, 2026, 6:07 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a0ca80db6288190ae99313c1f2485db |
completed | May 19, 2026, 6:12 p.m. |
Created at: April 17, 2026, 5:54 p.m.