Triple
T23466603
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Entrez |
E569116
|
entity |
| Predicate | supportsDatabase |
P11254
|
FINISHED |
| Object |
HomoloGene
HomoloGene is an NCBI-curated database that groups homologous genes from multiple completely sequenced eukaryotic genomes to support comparative genomics and evolutionary analysis.
|
E1589487
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: HomoloGene | Statement: [Entrez, supportsDatabase, HomoloGene]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: HomoloGene Context triple: [Entrez, supportsDatabase, HomoloGene]
-
A.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
B.
UniRef
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
-
C.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
-
D.
UniParc
UniParc is a comprehensive, non-redundant archive that stores and tracks all known unique protein sequences from multiple sources over time.
-
E.
NCBI databases
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: HomoloGene Triple: [Entrez, supportsDatabase, HomoloGene]
Generated description
HomoloGene is an NCBI-curated database that groups homologous genes from multiple completely sequenced eukaryotic genomes to support comparative genomics and evolutionary analysis.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: HomoloGene Target entity description: HomoloGene is an NCBI-curated database that groups homologous genes from multiple completely sequenced eukaryotic genomes to support comparative genomics and evolutionary analysis.
-
A.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
B.
UniRef
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
-
C.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
-
D.
UniParc
UniParc is a comprehensive, non-redundant archive that stores and tracks all known unique protein sequences from multiple sources over time.
-
E.
NCBI databases
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458ebd808190b3298163132cfb0b |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a6fc35c48190a67614fb4170f15b |
completed | April 29, 2026, 6:36 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a0c8254f3fc819098b6b59eb19e27f0 |
completed | May 19, 2026, 3:31 p.m. |
| NEDg | Description generation | batch_6a0ca6efb0d88190bf15b18cc3f12482 |
completed | May 19, 2026, 6:07 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a0ca80db6288190ae99313c1f2485db |
completed | May 19, 2026, 6:12 p.m. |
Created at: April 17, 2026, 5:54 p.m.