Triple
T22931923
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | UniGene |
E569464
|
entity |
| Predicate | relatedTo |
P37
|
FINISHED |
| Object |
dbEST
dbEST is a public database at NCBI that archives and provides access to expressed sequence tag (EST) data used for gene discovery and expression analysis.
|
E1562324
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: dbEST | Statement: [UniGene, relatedTo, dbEST]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: dbEST Context triple: [UniGene, relatedTo, dbEST]
-
A.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
B.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
-
C.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
D.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
E.
ENSB
ENSB is the ICAO airport code for Svalbard Airport, Longyear, the main air gateway to the Svalbard archipelago in Norway.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: dbEST Triple: [UniGene, relatedTo, dbEST]
Generated description
dbEST is a public database at NCBI that archives and provides access to expressed sequence tag (EST) data used for gene discovery and expression analysis.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: dbEST Target entity description: dbEST is a public database at NCBI that archives and provides access to expressed sequence tag (EST) data used for gene discovery and expression analysis.
-
A.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
B.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
-
C.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
D.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
E.
ENSB
ENSB is the ICAO airport code for Svalbard Airport, Longyear, the main air gateway to the Svalbard archipelago in Norway.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458f7d008190901dccbaebeaba24 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1813260608190bb9e1ca704c7e12f |
completed | April 29, 2026, 3:55 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a0bc24cd43c81908111b62945f91dda |
completed | May 19, 2026, 1:52 a.m. |
| NEDg | Description generation | batch_6a0bc407cd448190bd843360d65fdf22 |
completed | May 19, 2026, 1:59 a.m. |
| NED2 | Entity disambiguation (via description) | batch_6a0bc46fd3d0819094a532a8d6a0b9b2 |
completed | May 19, 2026, 2:01 a.m. |
Created at: April 17, 2026, 3:44 p.m.