Triple

T22693405
Position Surface form Disambiguated ID Type / Status
Subject RNA polymerase II E561106 entity
Predicate interactsWith P3970 FINISHED
Object TFIIB
TFIIB is a general transcription factor that helps recruit and position RNA polymerase II at gene promoters to initiate transcription in eukaryotic cells.
E1551043 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TFIIB | Statement: [RNA polymerase II, interactsWith, TFIIB]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: TFIIB
Context triple: [RNA polymerase II, interactsWith, TFIIB]
  • A. CTCF
    CTCF is a state prison facility in Colorado that houses incarcerated individuals under the jurisdiction of the Colorado Department of Corrections.
  • B. RNA polymerase II
    RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
  • C. MAFA transcription factor
    MAFA transcription factor is a beta cell–specific transcription factor that plays a key role in regulating insulin gene expression and pancreatic islet function.
  • D. FOXA2 transcription factor
    FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
  • E. TARDBP
    TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: TFIIB
Triple: [RNA polymerase II, interactsWith, TFIIB]
Generated description
TFIIB is a general transcription factor that helps recruit and position RNA polymerase II at gene promoters to initiate transcription in eukaryotic cells.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: TFIIB
Target entity description: TFIIB is a general transcription factor that helps recruit and position RNA polymerase II at gene promoters to initiate transcription in eukaryotic cells.
  • A. CTCF
    CTCF is a state prison facility in Colorado that houses incarcerated individuals under the jurisdiction of the Colorado Department of Corrections.
  • B. RNA polymerase II
    RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
  • C. MAFA transcription factor
    MAFA transcription factor is a beta cell–specific transcription factor that plays a key role in regulating insulin gene expression and pancreatic islet function.
  • D. fibrillarin
    Fibrillarin is a highly conserved nucleolar protein that functions as a core component of small nucleolar ribonucleoproteins (snoRNPs), playing a key role in rRNA processing and ribosome biogenesis.
  • E. FOXA2 transcription factor
    FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2454d71b48190a1f80af9f82b6fcf completed April 17, 2026, 2:35 p.m.
NER Named-entity recognition batch_69f1789c6ae481908975b7d27e7624ac completed April 29, 2026, 3:18 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0b7ece75648190a841256cf08a72f8 completed May 18, 2026, 9:04 p.m.
NEDg Description generation batch_6a0b834f488c8190bee40bd1caea0e40 completed May 18, 2026, 9:23 p.m.
NED2 Entity disambiguation (via description) batch_6a0b8717b65c819089d29c1802d1ed55 completed May 18, 2026, 9:39 p.m.
Created at: April 17, 2026, 3:13 p.m.