Triple
T22693405
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | RNA polymerase II |
E561106
|
entity |
| Predicate | interactsWith |
P3970
|
FINISHED |
| Object |
TFIIB
TFIIB is a general transcription factor that helps recruit and position RNA polymerase II at gene promoters to initiate transcription in eukaryotic cells.
|
E1551043
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TFIIB | Statement: [RNA polymerase II, interactsWith, TFIIB]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: TFIIB Context triple: [RNA polymerase II, interactsWith, TFIIB]
-
A.
CTCF
CTCF is a state prison facility in Colorado that houses incarcerated individuals under the jurisdiction of the Colorado Department of Corrections.
-
B.
RNA polymerase II
RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
-
C.
MAFA transcription factor
MAFA transcription factor is a beta cell–specific transcription factor that plays a key role in regulating insulin gene expression and pancreatic islet function.
-
D.
FOXA2 transcription factor
FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
-
E.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: TFIIB Triple: [RNA polymerase II, interactsWith, TFIIB]
Generated description
TFIIB is a general transcription factor that helps recruit and position RNA polymerase II at gene promoters to initiate transcription in eukaryotic cells.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: TFIIB Target entity description: TFIIB is a general transcription factor that helps recruit and position RNA polymerase II at gene promoters to initiate transcription in eukaryotic cells.
-
A.
CTCF
CTCF is a state prison facility in Colorado that houses incarcerated individuals under the jurisdiction of the Colorado Department of Corrections.
-
B.
RNA polymerase II
RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
-
C.
MAFA transcription factor
MAFA transcription factor is a beta cell–specific transcription factor that plays a key role in regulating insulin gene expression and pancreatic islet function.
-
D.
fibrillarin
Fibrillarin is a highly conserved nucleolar protein that functions as a core component of small nucleolar ribonucleoproteins (snoRNPs), playing a key role in rRNA processing and ribosome biogenesis.
-
E.
FOXA2 transcription factor
FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2454d71b48190a1f80af9f82b6fcf |
completed | April 17, 2026, 2:35 p.m. |
| NER | Named-entity recognition | batch_69f1789c6ae481908975b7d27e7624ac |
completed | April 29, 2026, 3:18 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a0b7ece75648190a841256cf08a72f8 |
completed | May 18, 2026, 9:04 p.m. |
| NEDg | Description generation | batch_6a0b834f488c8190bee40bd1caea0e40 |
completed | May 18, 2026, 9:23 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a0b8717b65c819089d29c1802d1ed55 |
completed | May 18, 2026, 9:39 p.m. |
Created at: April 17, 2026, 3:13 p.m.