Triple
T17521737
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | hasComponent |
P35
|
FINISHED |
| Object |
BiocSingular package
The BiocSingular package is a Bioconductor software tool that provides efficient, flexible methods for performing singular value decomposition and related dimensionality reduction tasks on high-throughput biological data.
|
E426691
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BiocSingular package | Statement: [Bioconductor, hasComponent, BiocSingular package]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BiocSingular package Context triple: [Bioconductor, hasComponent, BiocSingular package]
-
A.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
B.
OncoAnalytics
OncoAnalytics is a data and analytics platform by Flatiron Health that provides real-world oncology insights to support cancer research and clinical decision-making.
-
C.
Center for Computational Natural Sciences and Bioinformatics
The Center for Computational Natural Sciences and Bioinformatics is a research hub at IIIT Hyderabad focused on applying computational methods to problems in natural sciences and biological data analysis.
-
D.
BGI
BGI is the three-letter IATA airport code for Grantley Adams International Airport, the main international gateway to Barbados.
-
E.
BGI
BGI is the station code for Brigadeiro, a São Paulo Metro station on Line 2 (Green) in Brazil.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: BiocSingular package Triple: [Bioconductor, hasComponent, BiocSingular package]
Generated description
The BiocSingular package is a Bioconductor software tool that provides efficient, flexible methods for performing singular value decomposition and related dimensionality reduction tasks on high-throughput biological data.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: BiocSingular package Target entity description: The BiocSingular package is a Bioconductor software tool that provides efficient, flexible methods for performing singular value decomposition and related dimensionality reduction tasks on high-throughput biological data.
-
A.
Bioconductor
chosen
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
B.
OncoAnalytics
OncoAnalytics is a data and analytics platform by Flatiron Health that provides real-world oncology insights to support cancer research and clinical decision-making.
-
C.
Center for Computational Natural Sciences and Bioinformatics
The Center for Computational Natural Sciences and Bioinformatics is a research hub at IIIT Hyderabad focused on applying computational methods to problems in natural sciences and biological data analysis.
-
D.
BGI
BGI is the three-letter IATA airport code for Grantley Adams International Airport, the main international gateway to Barbados.
-
E.
BGI
BGI is the station code for Brigadeiro, a São Paulo Metro station on Line 2 (Green) in Brazil.
- F. None of above.
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a01c94237d08190bb1f874735c87803 |
completed | May 11, 2026, 12:19 p.m. |
| NEDg | Description generation | batch_6a01cabea2b48190a690b17a88d45b40 |
completed | May 11, 2026, 12:25 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a01cefa08f8819086cb86ce22193baa |
completed | May 11, 2026, 12:43 p.m. |
Created at: April 10, 2026, 5:49 a.m.