Triple

T17521732
Position Surface form Disambiguated ID Type / Status
Subject Bioconductor E426691 entity
Predicate hasComponent P35 FINISHED
Object AnnotationDbi package
The AnnotationDbi package is a Bioconductor R library that provides a framework and tools for interfacing with and managing biological annotation databases.
 E1274393 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: AnnotationDbi package | Statement: [Bioconductor, hasComponent, AnnotationDbi package]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: AnnotationDbi package
Context triple: [Bioconductor, hasComponent, AnnotationDbi package]
  • A. DataNucleus
    DataNucleus is an open-source Java persistence framework that provides comprehensive support for JPA and other data access standards across a wide range of datastores.
  • B. DBIO
    DBIO is the Division of Biological Physics within the American Physical Society, focusing on research at the interface of physics and the life sciences.
  • C. H2 Database
    H2 Database is a fast, lightweight, open-source relational database management system written in Java, commonly used for in-memory and embedded database scenarios.
  • D. Object Data Manager (ODM)
    Object Data Manager (ODM) is IBM AIX’s low-level database-like system for storing and managing configuration and system object information.
  • E. Jet Database Engine
    Jet Database Engine is Microsoft's file-based relational database engine that underpins applications like Microsoft Access for storing and managing structured data.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: AnnotationDbi package
Triple: [Bioconductor, hasComponent, AnnotationDbi package]
Generated description
The AnnotationDbi package is a Bioconductor R library that provides a framework and tools for interfacing with and managing biological annotation databases.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: AnnotationDbi package
Target entity description: The AnnotationDbi package is a Bioconductor R library that provides a framework and tools for interfacing with and managing biological annotation databases.
  • A. DataNucleus
    DataNucleus is an open-source Java persistence framework that provides comprehensive support for JPA and other data access standards across a wide range of datastores.
  • B. DBIO
    DBIO is the Division of Biological Physics within the American Physical Society, focusing on research at the interface of physics and the life sciences.
  • C. H2 Database
    H2 Database is a fast, lightweight, open-source relational database management system written in Java, commonly used for in-memory and embedded database scenarios.
  • D. Object Data Manager (ODM)
    Object Data Manager (ODM) is IBM AIX’s low-level database-like system for storing and managing configuration and system object information.
  • E. Jet Database Engine
    Jet Database Engine is Microsoft's file-based relational database engine that underpins applications like Microsoft Access for storing and managing structured data.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d889de677081909b22d2657b1f0292 completed April 10, 2026, 5:25 a.m.
NER Named-entity recognition batch_69e452d2f79881909556894728e255ab completed April 19, 2026, 3:58 a.m.
NED1 Entity disambiguation (via context triple) batch_6a01c94237d08190bb1f874735c87803 completed May 11, 2026, 12:19 p.m.
NEDg Description generation batch_6a01cabea2b48190a690b17a88d45b40 completed May 11, 2026, 12:25 p.m.
NED2 Entity disambiguation (via description) batch_6a01cefa08f8819086cb86ce22193baa completed May 11, 2026, 12:43 p.m.
Created at: April 10, 2026, 5:49 a.m.