Triple
T17521731
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | hasComponent |
P35
|
FINISHED |
| Object |
BiocFileCache package
The BiocFileCache package is a Bioconductor tool that manages, caches, and tracks local and remote resource files for reproducible bioinformatics workflows.
|
E426691
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BiocFileCache package | Statement: [Bioconductor, hasComponent, BiocFileCache package]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BiocFileCache package Context triple: [Bioconductor, hasComponent, BiocFileCache package]
-
A.
Lisa File System
Lisa File System is the proprietary disk file system developed by Apple for its early Lisa computer, featuring a hierarchical directory structure and advanced metadata for its time.
-
B.
Fast File System
Fast File System is a high-performance disk file system used by AmigaOS to improve speed and efficiency over its earlier standard file system.
-
C.
Be File System
Be File System (BFS) is a 64-bit journaling file system originally developed for BeOS, known for its support of extended attributes and efficient indexing.
-
D.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
E.
Tocache
Tocache is a city in northern Peru that serves as a local commercial and agricultural center within the San Martín Region.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: BiocFileCache package Triple: [Bioconductor, hasComponent, BiocFileCache package]
Generated description
The BiocFileCache package is a Bioconductor tool that manages, caches, and tracks local and remote resource files for reproducible bioinformatics workflows.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: BiocFileCache package Target entity description: The BiocFileCache package is a Bioconductor tool that manages, caches, and tracks local and remote resource files for reproducible bioinformatics workflows.
-
A.
Lisa File System
Lisa File System is the proprietary disk file system developed by Apple for its early Lisa computer, featuring a hierarchical directory structure and advanced metadata for its time.
-
B.
Fast File System
Fast File System is a high-performance disk file system used by AmigaOS to improve speed and efficiency over its earlier standard file system.
-
C.
Be File System
Be File System (BFS) is a 64-bit journaling file system originally developed for BeOS, known for its support of extended attributes and efficient indexing.
-
D.
Bioconductor
chosen
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
E.
Tocache
Tocache is a city in northern Peru that serves as a local commercial and agricultural center within the San Martín Region.
- F. None of above.
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a01c94237d08190bb1f874735c87803 |
completed | May 11, 2026, 12:19 p.m. |
| NEDg | Description generation | batch_6a01cabea2b48190a690b17a88d45b40 |
completed | May 11, 2026, 12:25 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a01cefa08f8819086cb86ce22193baa |
completed | May 11, 2026, 12:43 p.m. |
Created at: April 10, 2026, 5:49 a.m.