Triple

T17521730
Position Surface form Disambiguated ID Type / Status
Subject Bioconductor E426691 entity
Predicate hasComponent P35 FINISHED
Object ShortRead package
The ShortRead package is a Bioconductor software tool for importing, quality assessing, and manipulating high-throughput sequencing reads in R.
E1274392 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: ShortRead package | Statement: [Bioconductor, hasComponent, ShortRead package]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: ShortRead package
Context triple: [Bioconductor, hasComponent, ShortRead package]
  • A. Short
    Short is an English-language surname of Anglo-Saxon origin, historically given as a descriptive nickname for a person of small stature.
  • B. Short SC.1
    The Short SC.1 was an experimental British vertical take-off and landing (VTOL) research aircraft developed in the 1950s to test and demonstrate jet-powered VTOL technology.
  • C. K-short
    K-short is the short-lived neutral kaon, a subatomic meson that decays rapidly via the weak interaction and plays a key role in studies of CP violation.
  • D. Short 184
    The Short 184 was a British World War I reconnaissance and torpedo-carrying seaplane widely used for naval operations and notable for conducting the first successful aerial torpedo attack.
  • E. Shortie No Mass
    Shortie No Mass is an American rapper known for her collaborations with The Roots and appearances on their early 1990s hip-hop recordings.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: ShortRead package
Triple: [Bioconductor, hasComponent, ShortRead package]
Generated description
The ShortRead package is a Bioconductor software tool for importing, quality assessing, and manipulating high-throughput sequencing reads in R.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: ShortRead package
Target entity description: The ShortRead package is a Bioconductor software tool for importing, quality assessing, and manipulating high-throughput sequencing reads in R.
  • A. Short
    Short is an English-language surname of Anglo-Saxon origin, historically given as a descriptive nickname for a person of small stature.
  • B. Short SC.1
    The Short SC.1 was an experimental British vertical take-off and landing (VTOL) research aircraft developed in the 1950s to test and demonstrate jet-powered VTOL technology.
  • C. K-short
    K-short is the short-lived neutral kaon, a subatomic meson that decays rapidly via the weak interaction and plays a key role in studies of CP violation.
  • D. Short 184
    The Short 184 was a British World War I reconnaissance and torpedo-carrying seaplane widely used for naval operations and notable for conducting the first successful aerial torpedo attack.
  • E. Shortie No Mass
    Shortie No Mass is an American rapper known for her collaborations with The Roots and appearances on their early 1990s hip-hop recordings.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d889de677081909b22d2657b1f0292 completed April 10, 2026, 5:25 a.m.
NER Named-entity recognition batch_69e452d2f79881909556894728e255ab completed April 19, 2026, 3:58 a.m.
NED1 Entity disambiguation (via context triple) batch_6a01c94237d08190bb1f874735c87803 completed May 11, 2026, 12:19 p.m.
NEDg Description generation batch_6a01cabea2b48190a690b17a88d45b40 completed May 11, 2026, 12:25 p.m.
NED2 Entity disambiguation (via description) batch_6a01cefa08f8819086cb86ce22193baa completed May 11, 2026, 12:43 p.m.
Created at: April 10, 2026, 5:49 a.m.