Triple
T17521727
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | hasComponent |
P35
|
FINISHED |
| Object |
GenomicFeatures package
The GenomicFeatures package is a Bioconductor tool in R for representing, manipulating, and annotating genomic intervals and gene models using database-backed transcript annotations.
|
E1274389
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: GenomicFeatures package | Statement: [Bioconductor, hasComponent, GenomicFeatures package]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: GenomicFeatures package Context triple: [Bioconductor, hasComponent, GenomicFeatures package]
-
A.
Genome Data Viewer
Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
-
B.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
C.
Genomic Science program
The Genomic Science program is a U.S. Department of Energy research initiative that applies genomics and systems biology to understand and harness biological processes for energy, environmental, and climate-related applications.
-
D.
Edico Genome
Edico Genome was a biotechnology company specializing in high-speed genomic data analysis through its DRAGEN bio-IT platform and FPGA-based acceleration technology.
-
E.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: GenomicFeatures package Triple: [Bioconductor, hasComponent, GenomicFeatures package]
Generated description
The GenomicFeatures package is a Bioconductor tool in R for representing, manipulating, and annotating genomic intervals and gene models using database-backed transcript annotations.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: GenomicFeatures package Target entity description: The GenomicFeatures package is a Bioconductor tool in R for representing, manipulating, and annotating genomic intervals and gene models using database-backed transcript annotations.
-
A.
Genome Data Viewer
Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
-
B.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
C.
Genomic Science program
The Genomic Science program is a U.S. Department of Energy research initiative that applies genomics and systems biology to understand and harness biological processes for energy, environmental, and climate-related applications.
-
D.
Edico Genome
Edico Genome was a biotechnology company specializing in high-speed genomic data analysis through its DRAGEN bio-IT platform and FPGA-based acceleration technology.
-
E.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a01c94237d08190bb1f874735c87803 |
completed | May 11, 2026, 12:19 p.m. |
| NEDg | Description generation | batch_6a01cabea2b48190a690b17a88d45b40 |
completed | May 11, 2026, 12:25 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a01cefa08f8819086cb86ce22193baa |
completed | May 11, 2026, 12:43 p.m. |
Created at: April 10, 2026, 5:49 a.m.