Triple

T17521714
Position Surface form Disambiguated ID Type / Status
Subject Bioconductor E426691 entity
Predicate hasComponent P35 FINISHED
Object GenomicRanges package
The GenomicRanges package is an R/Bioconductor toolkit for representing, manipulating, and analyzing genomic intervals and their associated annotation data.
E426691 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: GenomicRanges package | Statement: [Bioconductor, hasComponent, GenomicRanges package]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: GenomicRanges package
Context triple: [Bioconductor, hasComponent, GenomicRanges package]
  • A. Genome Data Viewer
    Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
  • B. Bioconductor
    Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
  • C. Center of Excellence in Genomic Medicine Research
    The Center of Excellence in Genomic Medicine Research is a specialized research institute at King Abdulaziz University focused on advancing genomic science and its applications in medicine and healthcare.
  • D. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • E. Ensembl
    Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: GenomicRanges package
Triple: [Bioconductor, hasComponent, GenomicRanges package]
Generated description
The GenomicRanges package is an R/Bioconductor toolkit for representing, manipulating, and analyzing genomic intervals and their associated annotation data.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: GenomicRanges package
Target entity description: The GenomicRanges package is an R/Bioconductor toolkit for representing, manipulating, and analyzing genomic intervals and their associated annotation data.
  • A. Genome Data Viewer
    Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
  • B. Bioconductor chosen
    Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
  • C. Center of Excellence in Genomic Medicine Research
    The Center of Excellence in Genomic Medicine Research is a specialized research institute at King Abdulaziz University focused on advancing genomic science and its applications in medicine and healthcare.
  • D. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • E. Ensembl
    Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
  • F. None of above.

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d889de677081909b22d2657b1f0292 completed April 10, 2026, 5:25 a.m.
NER Named-entity recognition batch_69e452d2f79881909556894728e255ab completed April 19, 2026, 3:58 a.m.
NED1 Entity disambiguation (via context triple) batch_6a01c94237d08190bb1f874735c87803 completed May 11, 2026, 12:19 p.m.
NEDg Description generation batch_6a01cabea2b48190a690b17a88d45b40 completed May 11, 2026, 12:25 p.m.
NED2 Entity disambiguation (via description) batch_6a01cefa08f8819086cb86ce22193baa completed May 11, 2026, 12:43 p.m.
Created at: April 10, 2026, 5:49 a.m.