UniProt flat file
E736819
The UniProt flat file is a text-based file format used by the UniProt database to provide detailed, structured annotations and sequence information for proteins.
All labels observed (2)
| Label | Occurrences |
|---|---|
| UniProt flat file canonical | 1 |
| UniProt flat file format | 1 |
How this entity was disambiguated
This entity first appeared as the object of triple T8482775 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: UniProt flat file Context triple: [UniProt protein sequences, format, UniProt flat file]
-
A.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
B.
Protein database
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
-
C.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
D.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
E.
RefSeq
RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: UniProt flat file Target entity description: The UniProt flat file is a text-based file format used by the UniProt database to provide detailed, structured annotations and sequence information for proteins.
-
A.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
B.
Protein database
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
-
C.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
D.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
E.
RefSeq
RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
- F. None of above. chosen
Statements (59)
| Predicate | Object |
|---|---|
| instanceOf | file format ⓘ |
| associatedWith |
UniProtKB/Swiss-Prot
ⓘ
UniProtKB/TrEMBL ⓘ |
| contains |
accession number
ⓘ
comments section ⓘ cross-references to other databases ⓘ domain and site annotation ⓘ entry name ⓘ feature table ⓘ functional annotation ⓘ gene name ⓘ interaction information ⓘ keywords ⓘ post-translational modification annotation ⓘ protein existence evidence ⓘ protein name ⓘ protein sequence ⓘ references section ⓘ sequence caution notes ⓘ sequence features with positions ⓘ sequence length ⓘ sequence status ⓘ similarity comments ⓘ subcellular location annotation ⓘ taxonomy information ⓘ |
| domain |
bioinformatics
ⓘ
proteomics ⓘ |
| hasAlternative |
FASTA format
ⓘ
XML format ⓘ |
| hasComponent |
AC line
ⓘ
CC line ⓘ DE line ⓘ DR line ⓘ FT line ⓘ GN line ⓘ ID line ⓘ OC line ⓘ OS line ⓘ OX line ⓘ RC line ⓘ RL line ⓘ RN line ⓘ RP line ⓘ RT line ⓘ RX line ⓘ SQ line ⓘ line type identifiers ⓘ two-letter line codes ⓘ |
| hasProperty |
human-readable
ⓘ
machine-parseable ⓘ |
| hasStructure | line-based layout ⓘ |
| maintainedBy | UniProt Consortium ⓘ |
| serializationOf | UniProtKB entry ⓘ |
| supports |
cross-database integration
ⓘ
rich annotation ⓘ |
| usedBy |
UniProt
ⓘ
linked to:
UniProt Knowledgebase
UniProtKB ⓘ
linked to:
UniProt Knowledgebase
|
| usedFor |
protein annotation representation
ⓘ
protein sequence representation ⓘ |
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: UniProt flat file Description of subject: The UniProt flat file is a text-based file format used by the UniProt database to provide detailed, structured annotations and sequence information for proteins.
Referenced by (2)
Full triples — surface form annotated when it differs from this entity's canonical label.
linked to: UniProt flat file